heatmap_plot

namespace: RDotNET.Extensions.VisualBasic.stats

Properties

addExpr

expression that will be evaluated after the call to image. Can be used to add components to the plot.

cexCol

positive numbers, used as cex.axis in for the row or column axis labeling. The defaults currently only use number of rows or columns, respectively.

cexRow

positive numbers, used as cex.axis in for the row or column axis labeling. The defaults currently only use number of rows or columns, respectively.

ColSideColors

(optional) character vector of length ncol(x) containing the color names for a horizontal side bar that may be used to annotate the columns of x.

distfun

function used to compute the distance (dissimilarity) between both rows and columns. Defaults to dist.

hclustfun

function used to compute the hierarchical clustering when Rowv or Colv are not dendrograms. Defaults to hclust. Should take as argument a result of distfun and return an object to which as.dendrogram can be applied.

keepDendro

logical indicating if the dendrogram(s) should be kept as part of the result (when Rowv and/or Colv are not NA).

labCol

character vectors with row and column labels to use; these default to rownames(x) or colnames(x), respectively.

labRow

character vectors with row and column labels to use; these default to rownames(x) or colnames(x), respectively.

main

main, x- and y-axis titles; defaults to none.

margins

numeric vector of length 2 containing the margins (see par(mar = *)) for column and row names, respectively.

naRM

logical indicating whether NA’s should be removed.

reorderfun

function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses reorder.dendrogram.

revC

logical indicating if the column order should be reversed for plotting, such that e.g., for the symmetric case, the symmetry axis is as usual.

RowSideColors

(optional) character vector of length nrow(x) containing the color names for a vertical side bar that may be used to annotate the rows of x.

scale

character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is “row” if symm false, and “none” otherwise.

symm

logical indicating if x should be treated symmetrically; can only be true when x is a square matrix.

verbose

logical indicating if information should be printed.

x

numeric matrix of the values to be plotted.

xlab

main, x- and y-axis titles; defaults to none.

ylab

main, x- and y-axis titles; defaults to none.