Regprecise

namespace: SMRUCC.genomics.Data.WebServices.Regprecise

Methods

genes

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.genes(System.Int32,System.Boolean)
  • Retrieves a list of regulated genes that belongs to either a given regulon or regulog.
Parameter Name Remarks
Id Regulon or regulog identifier
regulon -

genomes

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.genomes
  • Retrieves a list of genomes that have at least one reconstructed regulon.

genomeStats

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.genomeStats
  • Retrieves a general statistics on regulons and regulatory sites in genomes

regulators

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulators(System.Int32,System.Boolean)
  • Retrieves a list of regulators that belong to either a given regulon or regulog.
Parameter Name Remarks
Id Regulon or regulog identifier
regulon -

regulog

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulog(System.Int32)

Retrieves a regulog

Parameter Name Remarks
regulogId Identifier of regulog

regulogCollections

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulogCollections(System.String)
  • Retrieves description of regulog collections of a specific type.
Parameter Name Remarks
type Type of a collection of regulogs

regulogCollectionStats

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulogCollectionStats(System.String)
  • Retrieves general statistics on regulog collections of a particular type.
Parameter Name Remarks
type -

regulogs

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulogs(System.String,System.Int32)
  • Retrieves a list of regulogs that belongs to a specific collection
Parameter Name Remarks
collectionType Type of a collection of regulogs
collectionId Identifier of collection

regulon

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulon(System.Int32)

Retrieves a regulon.

Parameter Name Remarks
regulonId -

regulons

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.regulons(System.Int32,System.Boolean)
  • Retrieves a list of regulons belonging to either a particular regulog or to a particular genome, input Either regulog identifier or genome identifier
Parameter Name Remarks
Id Either regulog identifier or genome identifier
genome -

release

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.release

Retrieves version and date of the current release of RegPrecise database

Retrieves``1

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.Retrieves``1(System.String)

只对集合类型有效

searchExtRegulons

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.searchExtRegulons(System.Int32,System.String)

Retrieves a list of regulon references by genome taxonomy id and comma-delimited list of gene locusTags, inputs the NCBI taxonomy id and comma-delimited list of gene locusTags

Parameter Name Remarks
taxonomyId NCBI taxonomy id of a genome
locusTags comma-delimited list of gene locusTags

searchRegulons

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.searchRegulons(System.String,System.String)
  • Retrieves a list of regulon references by the name/locus tag of either regulator or target regulated genes, Object type (either ‘gene’ or ‘regulator’) and text value representing either locusTag or name
Parameter Name Remarks
objType Object type to search, value can be “gene” or “regulator”
text Either locus tag or a name of gene/regulator to search

sites

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.sites(System.Int32,System.Boolean)
  • Retrieves a list of regulatory sites (TF binding sites or RNA regulatory elements) and associated regulated genes that belong to a given regulon or regulog.
Parameter Name Remarks
Id -
regulon -

wGetDownload

1
SMRUCC.genomics.Data.WebServices.Regprecise.Regprecise.wGetDownload(SMRUCC.genomics.Data.Regprecise.WebServices.JSONLDM.regulon,SMRUCC.genomics.Data.Regprecise.WebServices.JSONLDM.genome,System.String,Microsoft.VisualBasic.Logging.LogFile,System.Boolean)

下载得到调控记录的时候同时也会得到从KEGG数据库之中所下载得到的蛋白质序列Fasta数据

Parameter Name Remarks
regulon -
genome -
repository -
ErrLog -
disableRegulatorDownloads -